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    Home » Recipes » Breakfast

    The Best Paleo Lemon Blueberry Muffins

    Modified: Sep 28, 2025 • Published: Aug 2, 2020 by Dr. Erin Carter • This post may contain affiliate links • 17 Comments

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    These are the best paleo lemon blueberry muffins! They have the perfect light and fluffy texture and are bursting with fresh blueberries. These healthy muffins are so easy to make and are also gluten-free and dairy-free.

    A stack of three paleo lemon blueberry muffins.

    I love creating healthy muffin recipes like my paleo orange chocolate muffins, which is why I can't wait for you to try the muffin recipe I am sharing with you today.

    Table of Contents
    • Why you will love these muffins:
    • Ingredients:
    • Recipe variations and add ins:
    • How to make paleo lemon blueberry muffins:
    • Top tips:
    • Paleo lemon blueberry muffins FAQs:
    • Other paleo baked goods you will love:
    • Recipe

    Why you will love these muffins:

    • They taste amazing! They have hints of lemon, are bursting with blueberries, and are soft and fluffy on the inside with nice firm muffin tops.
    • They are really easy to make.
    • These muffins are high in protein with 7 grams of protein per muffin.
    • Besides being paleo these muffins are also gluten-free, dairy-free, refined sugar free and grain free.

    If you love the flavour combination of lemon and blueberries you will also love my lemon blueberry cookies and paleo lemon blueberry pop tarts.

    Ingredients:

    For the exact measurements refer to the recipe card later in this post.

    Jump to the Recipe
    The ingredients needed to make lemon blueberry muffins separated into bowls including flour, eggs, honey, lemon zest, lemon juice and blueberries.
    • Dry ingredients: almond flour, tapioca flour, coconut flour, baking soda and salt. Be sure to use almond flour and not almond meal which is too gritty. Note that tapioca flour and cassava flour are not the same so don't confuse the two.
    • Wet ingredients: full fat coconut milk, melted coconut oil, honey or maple syrup and vanilla extract.
    • Lemons: you will use these for both the lemon zest and lemon juice.
    • Eggs: to help these muffins rise when they bake.
    • Blueberries: I recommend using fresh rather than frozen blueberries.

    Recipe variations and add ins:

    • You can use a nut milk such as unsweetened cashew milk or almond instead of coconut milk.
    • Instead of almond flour you can use cashew flour instead.
    • If you want the muffins to have more lemon flavour, use lemon zest from two lemons instead of one.

    How to make paleo lemon blueberry muffins:

    A mixing bowl with a muffin batter in it with a spoon in the batter.
    1. Step 1: Preheat your oven to 350 degrees Fahrenheit and add all of the ingredients, except for the blueberries, to a large bowl and stir well until the batter is smooth.
    A mixing bowl with a blueberry muffin batter in it.
    1. Step 2: Gently stir in the blueberries. 
    A muffin pan with blueberry muffin batter in it.
    1. Step 3: Line a muffin tray with parchment paper muffin cups and fill each cup with the batter until the muffin cup is full.
    A muffin pan with baked blueberry muffins in it.
    1. Step 4: Bake the muffins for 25 minutes, or until a toothpick inserted inside comes out clean. Let the muffins cool and enjoy! 

    Top tips:

    • Do not try swapping or omitting any of the other flours - the muffins will not turn out!
    • To use frozen blueberries: rinse the blueberries in cold water until the water running off turns from a dark blue or purple colour to a lighter blue or red colour. Then dry the blueberries really well before using.
    • Storage: Store these muffins in an airtight container in the fridge for up to 7 days.
    A stack of three lemon blueberry muffins, with a bite out of the top muffin.

    Paleo lemon blueberry muffins FAQs:

    Can you omit or swap the eggs?

    Yes! Instead of eggs you can use chia seed eggs which would turn these into vegan lemon blueberry muffins!

    Can I freeze these muffins?

    Yes! They freeze really well. Just place them in an airtight bag or container and freeze them for up to 3 months.

    Can I use cassava flour instead of tapioca flour?

    Definitely not. Cassava flour and tapioca flour are entirely different.

    Other paleo baked goods you will love:

    • A loaf of double chocolate zucchini bread topped with chocolate chips cut into slices.
      Healthy Double Chocolate Zucchini Bread (gluten-free)
    • A stack of paleo blueberry pancakes on a plate with syrup being poured on them.
      The Best Paleo Blueberry Pancakes
    • A glass baking dish filled with a blueberry raspberry cobbler with a serving spoon in it.
      Blueberry Raspberry Cobbler (gluten-free, paleo & vegan)
    • A batch of vegan blondies cut into pieces and topped with course sea salt.
      Paleo Chocolate Chip Cookie Bars (gluten-free & dairy-free)

    Since you made it this far we are basically best friends so be sure to follow me on Instagram, Pinterest, TikTok and Facebook where I share even more recipes and healthy living tips! And don’t forget to leave this recipe a star review before you go!

    Recipe

    Paleo Lemon Blueberry Muffins

    You are going to love these paleo lemon blueberry muffins! They have the most amazing flavour and are really easy to make.
    4.75 from 27 votes
    Print Pin Rate
    Course: Breakfast, Snack
    Cuisine: American
    Diet: Diabetic, Gluten Free, Low Lactose
    Prep Time: 5 minutes minutes
    Cook Time: 25 minutes minutes
    Total Time: 30 minutes minutes
    Servings: 12
    Calories: 262kcal
    Author: Dr. Erin Carter

    Equipment

    • Muffin pan
    • Parchment paper muffin cups

    Ingredients

    • 2 1/2 cups almond flour
    • 1/2 cup tapioca flour
    • 2 tablespoon coconut flour
    • 1 tablespoon lemon zest
    • 1 teaspoon baking soda
    • pinch sea salt
    • 3 large eggs
    • 1/3 cup honey or maple syrup
    • 1/4 cup melted coconut oil
    • 1/4 cup fresh lemon juice
    • 1/4 cup full fat coconut milk
    • 2 cups fresh blueberries

    Instructions

    • Preheat your oven to 350F.
    • Add all of the ingredients, except for the blueberries, to a large bowl and stir well with a spoon until combined and smooth.
    • Add the blueberries to the batter and stir them in.
    • Line a muffin tray with parchment paper muffin liners and fill each cup with batter until the muffin cup is full.
    • Place the tray in the oven and bake for ~25 minutes, until a toothpick inserted inside comes out clean.
    • Let them cool and then enjoy!

    Notes

    1. This recipes yields 12 muffins.
    2. Nutritional values are an estimate and will vary depending on the exact ingredients used. 

    Nutrition

    Calories: 262kcal | Carbohydrates: 22g | Protein: 7g | Fat: 18g | Saturated Fat: 6g | Cholesterol: 41mg | Sodium: 124mg | Potassium: 55mg | Fiber: 4g | Sugar: 11g | Vitamin A: 73IU | Vitamin C: 5mg | Calcium: 57mg | Iron: 1mg
    Tried this Recipe? Pin it for Later!Mention @pureandsimpleno or tag #pureandsimpleno!

    DISCLAIMERS: The statements made on this website have not been approved by the Food and Drug Administration or Health Canada. The information is not intended to diagnose, treat, cure, or prevent disease. You assume full responsibility for how you use this information. Always consult with your physician or other health professionals before making any diet or lifestyle changes. This post may contain affiliate links whereby if you purchase these products I receive a small percentage of the sale price. This allows me to keep the blog running and I thank you for allowing me to do that!

    Reader Interactions

    Comments

    1. Leslie

      July 09, 2023 at 10:17 am

      Absolutely loved these. A keeper.
      Thank you.

      Reply
      • Erin Carter

        July 09, 2023 at 11:20 am

        Oh I am so glad you loved them! Thanks for commenting

        Reply
    2. Sherry

      June 01, 2023 at 12:06 pm

      I have to say the muffins are delicious. I had some coconut milk I wanted to use up… and so came across your recipe. Thank you. I will make them again.5 stars

      Reply
      • Erin Carter

        June 02, 2023 at 8:18 am

        I'm so glad you liked them! Thanks so much for commenting.

        Reply
      • Sabra Molder

        July 28, 2023 at 9:20 pm

        Instead of coconut flour could I add more almond flour

        Reply
        • Erin Carter

          July 30, 2023 at 1:15 pm

          I do not recommend doing that no. You can't replace coconut flour with almond flour one to one. The recipe won't turn out if you try that.

          Reply
    3. Andrea

      January 27, 2022 at 8:27 pm

      Can I use arrowroot starch instead of the tapioca flour?

      Reply
      • Erin Carter

        January 27, 2022 at 8:41 pm

        I have never tried that substitution so I am not sure. If you do try it please let me know how it goes.

        Reply
    4. Maya

      March 03, 2021 at 7:50 pm

      I tried this with flax eggs and they turned out great!

      Reply
      • Erin Carter

        March 13, 2021 at 4:37 pm

        Oh that's so good to know! Thanks so much for sharing! I'll update the recipe to include that option.

        Reply
    5. Diane Templeton

      January 16, 2021 at 8:54 pm

      I’ve been looking for a healthy, great tasting muffin and these are FANTASTIC. Thanks Erin!5 stars

      Reply
      • Erin Carter

        January 17, 2021 at 5:02 pm

        Oh yay I'm so thrilled you like them!!

        Reply
    6. Liz

      January 15, 2021 at 10:35 pm

      Can I use butter instead of coconut oil?

      Reply
      • Erin Carter

        January 17, 2021 at 5:03 pm

        Absolutely!!!

        Reply
        • Lynn

          February 09, 2025 at 2:38 pm

          The flavor and texture are hands, down, THE BEST! I did substitute 1 teaspoon of lemon extract for the zest and used 2 cups thawed, frozen wild blueberries. 🙂5 stars

          Reply
          • Dr. Erin Carter

            February 10, 2025 at 12:12 pm

            Oh I am so glad you love them!!!! Thanks so much for letting me know.

            Reply
    7. Kristie

      August 17, 2020 at 10:46 pm

      Delicious! 🙂5 stars

      Reply
    4.75 from 27 votes (23 ratings without comment)

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